PyCall broken with 1.7.3? #994
Description
I am hoping my environment is messed up somehow
I just start Julia, 'using PyCall' and y to 'add PyCall'
I get 'ERROR: LoadError: PyCall not properly installed. Please run Pkg.build("PyCall")'
See below for the requested and failed Pkg.build("PyCall")
The log files are here
https://drive.google.com/file/d/1pXBCoMkFoQu9bOEhGvu51ntcgbAHs0-v/view?usp=sharing
https://drive.google.com/file/d/10uqQc-4ih_1A-uSvZPT4l404pJJdjq_e/view?usp=sharing
`
(base) C02GC228MD6T:~ peter.wolf$ julia
...Version 1.7.3 (2022-05-06)
...
julia> using PyCall
│ Package PyCall not found, but a package named PyCall is available from a
│ registry.
│ Install package?
│ (@v1.7) pkg> add PyCall
└ (y/n) [y]: y
Updating registry at ~/.julia/registries/General.toml
Resolving package versions...
Updating ~/.julia/environments/v1.7/Project.toml
[438e738f] + PyCall v1.93.1
Updating ~/.julia/environments/v1.7/Manifest.toml
[8f4d0f93] + Conda v1.7.0
[682c06a0] + JSON v0.21.3
[1914dd2f] + MacroTools v0.5.9
[69de0a69] + Parsers v2.3.2
[438e738f] + PyCall v1.93.1
[81def892] + VersionParsing v1.3.0
[37e2e46d] + LinearAlgebra
[a63ad114] + Mmap
[e66e0078] + CompilerSupportLibraries_jll
[4536629a] + OpenBLAS_jll
[8e850b90] + libblastrampoline_jll
[ Info: Precompiling PyCall [438e738f-606a-5dbb-bf0a-cddfbfd45ab0]
ERROR: LoadError: PyCall not properly installed. Please run Pkg.build("PyCall")
Stacktrace:
[1] error(s::String)
@ Base ./error.jl:33
[2] top-level scope
@ ~/.julia/packages/PyCall/7a7w0/src/startup.jl:44
[3] include(mod::Module, _path::String)
@ Base ./Base.jl:418
[4] include(x::String)
@ PyCall ~/.julia/packages/PyCall/7a7w0/src/PyCall.jl:1
[5] top-level scope
@ ~/.julia/packages/PyCall/7a7w0/src/PyCall.jl:38
[6] include
@ ./Base.jl:418 [inlined]
[7] include_package_for_output(pkg::Base.PkgId, input::String, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt64}}, source::Nothing)
@ Base ./loading.jl:1318
[8] top-level scope
@ none:1
[9] eval
@ ./boot.jl:373 [inlined]
[10] eval(x::Expr)
@ Base.MainInclude ./client.jl:453
[11] top-level scope
@ none:1
in expression starting at /Users/peter.wolf/.julia/packages/PyCall/7a7w0/src/startup.jl:41
in expression starting at /Users/peter.wolf/.julia/packages/PyCall/7a7w0/src/PyCall.jl:1
ERROR: Failed to precompile PyCall [438e738f-606a-5dbb-bf0a-cddfbfd45ab0] to /Users/peter.wolf/.julia/compiled/v1.7/PyCall/jl_ypJJQ7.
Stacktrace:
[1] error(s::String)
@ Base ./error.jl:33
[2] compilecache(pkg::Base.PkgId, path::String, internal_stderr::IO, internal_stdout::IO, ignore_loaded_modules::Bool)
@ Base ./loading.jl:1466
[3] compilecache(pkg::Base.PkgId, path::String)
@ Base ./loading.jl:1410
[4] _require(pkg::Base.PkgId)
@ Base ./loading.jl:1120
[5] require(uuidkey::Base.PkgId)
@ Base ./loading.jl:1013
[6] require(into::Module, mod::Symbol)
@ Base ./loading.jl:997
`
`
julia> using Pkg
julia> Pkg.build("PyCall")
Building Conda ─→ ~/.julia/scratchspaces/44cfe95a-1eb2-52ea-b672-e2afdf69b78f/6e47d11ea2776bc5627421d59cdcc1296c058071/build.log
Building PyCall → ~/.julia/scratchspaces/44cfe95a-1eb2-52ea-b672-e2afdf69b78f/1fc929f47d7c151c839c5fc1375929766fb8edcc/build.log
ERROR: Error building PyCall, showing the last 100 of log:
transformers -> huggingface-hub[version='<1.0,>=0.1.0']
huggingface-hub
Package responses conflicts for:
datasets -> responses[version='<0.19']
responses
Package importlib-metadata conflicts for:
transformers -> importlib_metadata -> importlib-metadata[version='>=1.1.3,<1.1.4.0a0|>=1.6.0,<1.6.1.0a0|>=1.6.1,<1.6.2.0a0|>=1.7.0,<1.7.1.0a0|>=2.0.0,<2.0.1.0a0|>=3.10.0,<3.10.1.0a0|>=4.11.3,<4.11.4.0a0|>=4.8.2,<4.8.3.0a0|>=4.8.1,<4.8.2.0a0|>=4.6.4,<4.6.5.0a0|>=3.7.3,<3.7.4.0a0']
sacremoses -> click -> importlib-metadata
datasets -> importlib_metadata -> importlib-metadata[version='>=1.1.3,<1.1.4.0a0|>=1.6.0,<1.6.1.0a0|>=1.6.1,<1.6.2.0a0|>=1.7.0,<1.7.1.0a0|>=2.0.0,<2.0.1.0a0|>=3.10.0,<3.10.1.0a0|>=4.11.3,<4.11.4.0a0|>=4.8.2,<4.8.3.0a0|>=4.8.1,<4.8.2.0a0|>=4.6.4,<4.6.5.0a0|>=3.7.3,<3.7.4.0a0']
click -> importlib-metadata
Package cffi conflicts for:
pytorch -> cffi
transformers -> pytorch -> cffi
conda-content-trust -> cryptography -> cffi[version='!=1.11.3,>=1.8|>=1.12|>=1.8|>=1.7']
brotlipy -> cffi[version='>=1.0.0']
soundfile -> cffi[version='>=1.0']
cryptography -> cffi[version='!=1.11.3,>=1.8|>=1.12|>=1.8|>=1.7']
cffi
pyopenssl -> cryptography[version='>=35.0'] -> cffi[version='!=1.11.3,>=1.8|>=1.12|>=1.8|>=1.7']
urllib3 -> brotlipy[version='>=0.6.0'] -> cffi[version='!=1.11.3,>=1.8|>=1.0.0|>=1.12|>=1.8|>=1.7']
Package multiprocess conflicts for:
datasets -> multiprocess
multiprocess
Package ninja-base conflicts for:
pytorch -> ninja -> ninja-base==1.10.2=haf03e11_5
ninja-base
ninja -> ninja-base==1.10.2=haf03e11_5
Package sacremoses conflicts for:
transformers -> sacremoses
sacremoses
Package async-timeout conflicts for:
aiohttp -> async-timeout[version='<4.0,>=3.0|>=3.0,<4.0|>=4.0.0a3,<5.0|>=1.2,<3.0|>=1.2.0|<5.0,>=4.0.0a3']
datasets -> aiohttp -> async-timeout[version='<4.0,>=3.0|>=3.0,<4.0|>=4.0.0a3,<5.0|>=1.2,<3.0|>=1.2.0|<5.0,>=4.0.0a3']
async-timeout
Package zstd conflicts for:
pyarrow -> arrow-cpp[version='>=4.0.1,<4.0.2.0a0'] -> zstd[version='>=1.3.3,<1.3.4.0a0|>=1.3.7,<1.3.8.0a0|>=1.4.5,<1.5.0a0|>=1.4.9,<1.5.0a0']
conda-package-handling -> libarchive[version='>=3.3.3'] -> zstd[version='>=1.3.3,<1.3.4.0a0|>=1.3.7,<1.3.8.0a0|>=1.4.4,<1.5.0a0|>=1.5.0,<1.6.0a0|>=1.5.2,<1.6.0a0']
Package futures conflicts for:
pyarrow -> futures
conda[version='>=4.12.0'] -> conda-package-handling[version='>=1.3.0'] -> futures
conda-package-handling -> futures
Package joblib conflicts for:
joblib
transformers -> sacremoses -> joblib
sacremoses -> joblib
Package pyarrow conflicts for:
pyarrow
datasets -> pyarrow[version='>=0.17.1|>=5.0.0']
Package pandas conflicts for:
pyarrow -> pandas
datasets -> pandas
pandas
Package pyparsing conflicts for:
packaging -> pyparsing[version='!=3.0.5,>=2.0.2|>=2.0.2|>=2.0.2,!=3.0.5']
pyparsing
huggingface-hub -> packaging[version='>=20.9'] -> pyparsing[version='!=3.0.5,>=2.0.2|>=2.0.2|>=2.0.2,!=3.0.5']
datasets -> packaging -> pyparsing[version='!=3.0.5,>=2.0.2|>=2.0.2|>=2.0.2,!=3.0.5']
transformers -> packaging[version='>=20.0'] -> pyparsing[version='!=3.0.5,>=2.0.2|>=2.0.2|>=2.0.2,!=3.0.5']
Package zope.interface conflicts for:
attrs -> zope.interface
aiohttp -> attrs[version='>=17.3.0'] -> zope.interface
┌ Info: Using the Python distribution in the Conda package by default.
└ To use a different Python version, set ENV["PYTHON"]="pythoncommand" and re-run Pkg.build("PyCall").
[ Info: Running conda install -y numpy in root environment
ERROR: LoadError: failed process: Process(setenv(/Users/peter.wolf/miniconda3/envs/phinder/bin/conda install -y numpy,["XPC_FLAGS=0x0", "_CE_M=", "PATH=/Users/peter.wolf/opt/miniconda3/bin:/Users/peter.wolf/opt/miniconda3/condabin:/Users/peter.wolf/.cargo/bin:/Applications/Julia-1.7.app/Contents/Resources/julia/bin:/Library/Java/JavaVirtualMachines/jdk1.8.0_172.jdk/Contents/Home/bin:/usr/local/bin:/usr/bin:/bin:/usr/sbin:/sbin", "PWD=/Users/peter.wolf", "XPC_SERVICE_NAME=0", "TERM_PROGRAM=Apple_Terminal", "SHELL=/bin/bash", "MAVEN_OPTS=-Xmx1024m", "__CF_USER_TEXT_ENCODING=0x1F7:0x0:0x0", "OPENBLAS_NUM_THREADS=8" … "_CE_CONDA=", "USER=peter.wolf", "JULIA_EDITOR=emacsclient", "TERM=xterm-256color", "HOME=/Users/peter.wolf", "TERM_PROGRAM_VERSION=440", "JULIA_HOME=/Applications/Julia-1.7.app/Contents/Resources/julia", "JAVA_HOME=/Library/Java/JavaVirtualMachines/jdk1.8.0_172.jdk/Contents/Home", "OPENBLAS_MAIN_FREE=1", "PYTHONIOENCODING=UTF-8"]), ProcessExited(1)) [1]
Stacktrace:
[1] pipeline_error
@ ./process.jl:540 [inlined]
[2] run(::Cmd; wait::Bool)
@ Base ./process.jl:455
[3] run
@ ./process.jl:453 [inlined]
[4] runconda(args::Cmd, env::String)
@ Conda ~/.julia/packages/Conda/x2UxR/src/Conda.jl:128
[5] add(pkg::String, env::String; channel::String)
@ Conda ~/.julia/packages/Conda/x2UxR/src/Conda.jl:222
[6] add (repeats 2 times)
@ ~/.julia/packages/Conda/x2UxR/src/Conda.jl:221 [inlined]
[7] top-level scope
@ ~/.julia/packages/PyCall/7a7w0/deps/build.jl:79
[8] include(fname::String)
@ Base.MainInclude ./client.jl:451
[9] top-level scope
@ none:5
in expression starting at /Users/peter.wolf/.julia/packages/PyCall/7a7w0/deps/build.jl:43
Full log at /Users/peter.wolf/.julia/scratchspaces/44cfe95a-1eb2-52ea-b672-e2afdf69b78f/1fc929f47d7c151c839c5fc1375929766fb8edcc/build.log
Stacktrace:
[1] pkgerror(msg::String)
@ Pkg.Types /Applications/Julia-1.7.app/Contents/Resources/julia/share/julia/stdlib/v1.7/Pkg/src/Types.jl:68
[2] (::Pkg.Operations.var"#62#67"{Bool, Pkg.Types.Context, String, Pkg.Types.PackageSpec})()
@ Pkg.Operations /Applications/Julia-1.7.app/Contents/Resources/julia/share/julia/stdlib/v1.7/Pkg/src/Operations.jl:962
[3] withenv(::Pkg.Operations.var"#62#67"{Bool, Pkg.Types.Context, String, Pkg.Types.PackageSpec}, ::Pair{String, String}, ::Vararg{Pair{String}})
@ Base ./env.jl:172
[4] (::Pkg.Operations.var"#99#103"{String, Bool, Bool, Bool, Pkg.Operations.var"#62#67"{Bool, Pkg.Types.Context, String, Pkg.Types.PackageSpec}, Pkg.Types.PackageSpec})()
@ Pkg.Operations /Applications/Julia-1.7.app/Contents/Resources/julia/share/julia/stdlib/v1.7/Pkg/src/Operations.jl:1506
[5] with_temp_env(fn::Pkg.Operations.var"#99#103"{String, Bool, Bool, Bool, Pkg.Operations.var"#62#67"{Bool, Pkg.Types.Context, String, Pkg.Types.PackageSpec}, Pkg.Types.PackageSpec}, temp_env::String)
@ Pkg.Operations /Applications/Julia-1.7.app/Contents/Resources/julia/share/julia/stdlib/v1.7/Pkg/src/Operations.jl:1390
[6] (::Pkg.Operations.var"#98#102"{Bool, Bool, Bool, Pkg.Operations.var"#62#67"{Bool, Pkg.Types.Context, String, Pkg.Types.PackageSpec}, Pkg.Types.Context, Pkg.Types.PackageSpec, String, Pkg.Types.Project, String})(tmp::String)
@ Pkg.Operations /Applications/Julia-1.7.app/Contents/Resources/julia/share/julia/stdlib/v1.7/Pkg/src/Operations.jl:1469
[7] mktempdir(fn::Pkg.Operations.var"#98#102"{Bool, Bool, Bool, Pkg.Operations.var"#62#67"{Bool, Pkg.Types.Context, String, Pkg.Types.PackageSpec}, Pkg.Types.Context, Pkg.Types.PackageSpec, String, Pkg.Types.Project, String}, parent::String; prefix::String)
@ Base.Filesystem ./file.jl:750
[8] mktempdir(fn::Function, parent::String) (repeats 2 times)
@ Base.Filesystem ./file.jl:748
[9] sandbox(fn::Function, ctx::Pkg.Types.Context, target::Pkg.Types.PackageSpec, target_path::String, sandbox_path::String, sandbox_project_override::Pkg.Types.Project; force_latest_compatible_version::Bool, allow_earlier_backwards_compatible_versions::Bool, allow_reresolve::Bool)
@ Pkg.Operations /Applications/Julia-1.7.app/Contents/Resources/julia/share/julia/stdlib/v1.7/Pkg/src/Operations.jl:1435
[10] sandbox(fn::Function, ctx::Pkg.Types.Context, target::Pkg.Types.PackageSpec, target_path::String, sandbox_path::String, sandbox_project_override::Pkg.Types.Project)
@ Pkg.Operations /Applications/Julia-1.7.app/Contents/Resources/julia/share/julia/stdlib/v1.7/Pkg/src/Operations.jl:1432
[11] build_versions(ctx::Pkg.Types.Context, uuids::Set{Base.UUID}; verbose::Bool)
@ Pkg.Operations /Applications/Julia-1.7.app/Contents/Resources/julia/share/julia/stdlib/v1.7/Pkg/src/Operations.jl:943
[12] build(ctx::Pkg.Types.Context, uuids::Set{Base.UUID}, verbose::Bool)
@ Pkg.Operations /Applications/Julia-1.7.app/Contents/Resources/julia/share/julia/stdlib/v1.7/Pkg/src/Operations.jl:822
[13] build(ctx::Pkg.Types.Context, pkgs::Vector{Pkg.Types.PackageSpec}; verbose::Bool, kwargs::Base.Pairs{Symbol, Base.TTY, Tuple{Symbol}, NamedTuple{(:io,), Tuple{Base.TTY}}})
@ Pkg.API /Applications/Julia-1.7.app/Contents/Resources/julia/share/julia/stdlib/v1.7/Pkg/src/API.jl:992
[14] build(pkgs::Vector{Pkg.Types.PackageSpec}; io::Base.TTY, kwargs::Base.Pairs{Symbol, Union{}, Tuple{}, NamedTuple{(), Tuple{}}})
@ Pkg.API /Applications/Julia-1.7.app/Contents/Resources/julia/share/julia/stdlib/v1.7/Pkg/src/API.jl:149
[15] build(pkgs::Vector{Pkg.Types.PackageSpec})
@ Pkg.API /Applications/Julia-1.7.app/Contents/Resources/julia/share/julia/stdlib/v1.7/Pkg/src/API.jl:144
[16] #build#99
@ /Applications/Julia-1.7.app/Contents/Resources/julia/share/julia/stdlib/v1.7/Pkg/src/API.jl:142 [inlined]
[17] build
@ /Applications/Julia-1.7.app/Contents/Resources/julia/share/julia/stdlib/v1.7/Pkg/src/API.jl:142 [inlined]
[18] #build#98
@ /Applications/Julia-1.7.app/Contents/Resources/julia/share/julia/stdlib/v1.7/Pkg/src/API.jl:141 [inlined]
[19] build(pkg::String)
@ Pkg.API /Applications/Julia-1.7.app/Contents/Resources/julia/share/julia/stdlib/v1.7/Pkg/src/API.jl:141
[20] top-level scope
@ REPL[3]:1
`